A team of psychologists, social scientists, philosophers and evolutionary researchers affiliated with multiple institutions in the U.S. has found evidence suggesting that the slight advantage males have in navigation ability is likely due to differences in the ways male and female children are raised.
In their paper published in the journal Royal Society Open Science, the group describes how they studied navigational skills in multiple species to find out if there might be an evolutionary basis for one gender or the other having better skills.
There was a study some time ago that determined that it is more common for men to build mental 3D maps of their surroundings. Women navigate more commonly like bees by landmarks, direction and distances.
Mental 3D maps are better, but excessive. Affinity for men to do this is probably due to hunting and warfare.
Edit: Unable to find a link.